<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.3 20210610//EN" "JATS-journalpublishing1-3.dtd">
<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">perinatology</journal-id><journal-title-group><journal-title xml:lang="ru">Российский вестник перинатологии и педиатрии</journal-title><trans-title-group xml:lang="en"><trans-title>Rossiyskiy Vestnik Perinatologii i Pediatrii (Russian Bulletin of Perinatology and Pediatrics)</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">1027-4065</issn><issn pub-type="epub">2500-2228</issn><publisher><publisher-name>Ltd. “The National Academy of Pediatric Science and Innovation”</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.21508/1027-4065-2019-64-1-110-115</article-id><article-id custom-type="elpub" pub-id-type="custom">perinatology-830</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ОБМЕН ОПЫТОМ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>SHARING EXPERIENCES</subject></subj-group></article-categories><title-group><article-title>Анализ экспрессии генов по технологии nCounter Nanostring в медицинских исследованиях: опыт использования у детей с нефротическим синдромом</article-title><trans-title-group xml:lang="en"><trans-title>Analysis of gene expression by nCounter Nanostring technology in medical research: experience with children with nephrotic syndrome</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0942-0103</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Морозов</surname><given-names>С. Л.</given-names></name><name name-style="western" xml:lang="en"><surname>Morozov</surname><given-names>S. L.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Морозов   Сергей  Леонидович – кандидат медицинских наук,   старший научный сотрудник отдела наследственных и приобретенных болезней  почек.</p><p>125412 Москва,  ул Талдомская, д.2.</p></bio><bio xml:lang="en"><p>Moscow.</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Воронкова</surname><given-names>А. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Voronkova</surname><given-names>A. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Воронкова  Анастасия  Сергеевна  – научный сотрудник  лаборатории общей  патологии.</p><p>125412 Москва,  ул Талдомская, д.2.</p></bio><bio xml:lang="en"><p>Moscow.</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-3050-7748</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Длин</surname><given-names>В. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Dlin</surname><given-names>V. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Длин Владимир Викторович – доктор медицинских наук, профессор, заведующий отделом наследственных и приобретенных болезней  почек.</p><p>125412 Москва,  ул Талдомская, д.2.</p></bio><bio xml:lang="en"><p>Moscow.</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Туркина</surname><given-names>Т. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Turkina</surname><given-names>T. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Туркина Татьяна Ивановна – доктор биологических наук, профессор кафедры клинической лабораторной  диагностики.</p><p>125412 Москва,  ул Талдомская, д.2.</p></bio><bio xml:lang="en"><p>Moscow.</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0552-6939</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Сухоруков</surname><given-names>В. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Sukhorukov</surname><given-names>V. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Сухоруков  Владимир  Сергеевич  – доктор медицинских наук,  профессор,  заведующий лабораторией  Научного центра неврологии, профессор кафедры  гистологии, эмбриологии РНИМУ им. Н.И. Пирогова.</p><p>125412 Москва,  ул Талдомская, д.2.</p></bio><bio xml:lang="en"><p>Moscow.</p></bio><xref ref-type="aff" rid="aff-3"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Научно-исследовательский клинический институт педиатрии им. академика Ю.Е. Вельтищева</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Veltischev Research and  Clinical Institute for Pediatrics</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>РНИМУ им. Н.И. Пирогова Минздрава России</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Pirogov Russian National Research Medical University</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru"><institution>РНИМУ им. Н.И. Пирогова Минздрава России; Научный центр неврологии</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Pirogov Russian National Research Medical University; Research Center of Neurology</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2019</year></pub-date><pub-date pub-type="epub"><day>08</day><month>03</month><year>2019</year></pub-date><volume>64</volume><issue>1</issue><fpage>110</fpage><lpage>115</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Ltd. “The National Academy of Pediatric Science and Innovation”, 2019</copyright-statement><copyright-year>2019</copyright-year><copyright-holder xml:lang="ru">Ltd. “The National Academy of Pediatric Science and Innovation”</copyright-holder><copyright-holder xml:lang="en">Ltd. “The National Academy of Pediatric Science and Innovation”</copyright-holder><license xlink:href="https://www.ped-perinatology.ru/jour/about/submissions#copyrightNotice" xlink:type="simple"><license-p>https://www.ped-perinatology.ru/jour/about/submissions#copyrightNotice</license-p></license></permissions><self-uri xlink:href="https://www.ped-perinatology.ru/jour/article/view/830">https://www.ped-perinatology.ru/jour/article/view/830</self-uri><abstract><p>В эпоху современной медицины сформировались фундаментальные научные установки в диагностике  широкого круга заболеваний, которые основаны на традиционных инструментах: лабораторных и функциональных исследованиях,  световой микроскопии, иммунофлюоресценции и электронной микроскопии. Однако в последние десятилетия эти методы становятся недостаточными для верификации различных вариантов течения заболеваний, особенно с нетипичной клинической картиной. В статье рассматриваются возможности новой технологии nCounter от компании «Nanostring Technologies»,  подробно описаны возможности технологии в диагностике различных заболеваний, а также приведен собственный опыт использования в диагностике у детей с нефротическим синдромом.</p></abstract><trans-abstract xml:lang="en"><p>In the era of modern medicine, there are formed the fundamental scientific principles in the diagnosis of a wide range of diseases that are based on traditional instruments: laboratory and functional studies, light microscopy, immunofluorescence, and electron microscopy. However, in recent decades these methods have become insufficient to verify various variants of the diseases, especially with an atypical clinical picture. The article discusses the capabilities of the nCounter technology from the company Nanostring Technologies, it describes in detail the capabilities of the technology in the diagnosis of various diseases, and also the authors present their own experience of using diagnostics in children with nephrotic syndrome.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>дети</kwd><kwd>нефротический синдром</kwd><kwd>РНК</kwd><kwd>ДНК</kwd><kwd>экспрессия</kwd><kwd>нефрология</kwd><kwd>почка</kwd><kwd>транскриптомика</kwd></kwd-group><kwd-group xml:lang="en"><kwd>children</kwd><kwd>nephrotic syndrome</kwd><kwd>RNA</kwd><kwd>DNA</kwd><kwd>expression</kwd><kwd>nephrology</kwd><kwd>kidney</kwd><kwd>transcriptomics</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Benjamin A., Michael M. Molecular nephropathology: ready for prime time? Am J Physiol Renal Physiol 2015; 309: F185– F188. DOI: 10.21508/1027-4065-2017-62-3-32-36</mixed-citation><mixed-citation xml:lang="en">Benjamin A., Michael M. Molecular  nephropathology: ready for prime time? Am J Physiol Renal Physiol 2015; 309: F185– F188. DOI: 10.21508/1027-4065-2017-62-3-32-36</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Морозов С.Л., Длин В.В., Сухоруков В.С., Воронкова А.С. Молекулярная нефропатология: новые возможности диагностики заболеваний почек. Российский вестник перинатологии и педиатрии 2017; 62(3): 32–36. DOI: 10.21508/1027-4065-2017-62-3-32-36</mixed-citation><mixed-citation xml:lang="en">Morozov S.L.,  Dlin  V.V., Sukhorukov  V.S., Voronkova  A.S. Molecular  nephropology:   new  possibilities  for  the  diagnosis of kidney disease. Rossiyskiy Vestnik Perinatologii  i Pediatrii  (Russian  Bulletin of Perinatology  and Pediatrics) 2017; 62(3): 32–36.  (in Russ) DOI: 10.21508/1027-4065-2017-62-3-32-36</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Mengel M., Campbell P.M., Gebel H., Randhawa P., Rodriguez E.R., Colvin R. et al. Precision diagnostics in transplantation: from bench to bedside. Am J Transplant 2013; 13: 562–568. DOI: 10.1111/j.1600-6143.2012.04344.x</mixed-citation><mixed-citation xml:lang="en">Mengel M.,  Campbell P.M.,  Gebel H.,  Randhawa P., Rodriguez E.R., Colvin R. et al. Precision diagnostics in transplantation: from bench to bedside. Am J Transplant  2013; 13: 562–568. DOI: 10.1111/j.1600-6143.2012.04344.x</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Traitanon O., Poggio E., Fairchild R. Molecular monitoring of alloimmune-mediated injury in kidney transplant patients. Curr Opin Nephrol Hypertens 2014; 23: 625–630. DOI: 10.1097/MNH.0000000000000064</mixed-citation><mixed-citation xml:lang="en">Traitanon O., Poggio E.,  Fairchild R. Molecular  monitoring of alloimmune-mediated injury in kidney transplant  patients. Curr  Opin  Nephrol   Hypertens   2014;  23:  625–630.   DOI: 10.1097/MNH.0000000000000064</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Sis B., Jhangri G.S., Bunnag S., Allanach K., Kaplan B., Halloran P.F. Endothelial gene expression in kidney transplants with alloantibody indicates antibody-mediated damage despite lack of C4d staining. Am J Transplant 2009; 9: 2312–2323. DOI: 10.1111/j.1600-6143.2009.02761.x</mixed-citation><mixed-citation xml:lang="en">Sis B., Jhangri G.S., Bunnag S., Allanach K., Kaplan B., Halloran P.F. Endothelial  gene expression in kidney transplants with  alloantibody  indicates  antibody-mediated  damage  despite lack of C4d staining. Am J Transplant  2009; 9: 2312–2323. DOI: 10.1111/j.1600-6143.2009.02761.x</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Hidalgo L.G., Sis B., Sellares J., Campbell P.M., Mengel M., Einecke G. et al. NK cell transcripts and NK cells in kidney biopsies from patients with donorspecific antibodies: evidence for NK cell involvement in antibody mediated rejection. Am J Transplant 2010; 10: 1812–1822. DOI: 10.1111/j.1600-6143.2010.03201.x.</mixed-citation><mixed-citation xml:lang="en">Hidalgo L.G., Sis B., Sellares J., Campbell P.M.,  Mengel M., Einecke G. et al. NK cell transcripts  and NK cells in kidney biopsies from patients with donorspecific antibodies: evidence for  NK  cell  involvement  in  antibody mediated  rejection. Am J Transplant  2010; 10: 1812–1822. DOI: 10.1111/j.1600-6143.2010.03201.x.</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Hidalgo L.G., Sellares J., Sis B., Mengel M., Chang J., Halloran P.F. Interpreting NK cell transcripts versus T cell transcripts in renal transplant biopsies. Am J Transplant 2012; 12: 1180–1191. DOI: 10.1111/j.1600-6143.2011.03970.x</mixed-citation><mixed-citation xml:lang="en">Hidalgo L.G., Sellares J., Sis B., Mengel M.,  Chang J., Halloran P.F. Interpreting  NK cell transcripts versus T cell transcripts in renal transplant biopsies. Am J Transplant  2012; 12: 1180–1191. DOI: 10.1111/j.1600-6143.2011.03970.x</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Haas M., Sis B., Racusen L.C., Solez K., Glotz D., Colvin R.B. et al. Banff 2013 meeting report: inclusion of C4d-negative antibody-mediated rejection and antibody-associated arterial lesions. Am J Transplant 2014; 14: 272–283. DOI: 10.1111/ajt.12590</mixed-citation><mixed-citation xml:lang="en">Haas M., Sis B., Racusen L.C., Solez K., Glotz D., Colvin R.B. et al. Banff 2013 meeting  report:  inclusion  of C4d-negative antibody-mediated rejection and antibody-associated arterial lesions. Am J Transplant  2014; 14: 272–283.  DOI: 10.1111/ajt.12590</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Geiss G.K., Bumgarner R.E., Birditt B., Dahl T., Dowidar N., Dunaway D.L. et al. Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotechnol 2008; 26: 317–325. DOI: 10.1038/nbt1385</mixed-citation><mixed-citation xml:lang="en">Geiss G.K., Bumgarner R.E.,  Birditt B., Dahl T., Dowidar N., Dunaway D.L. et al. Direct multiplexed measurement of gene expression  with  color-coded  probe  pairs.  Nat  Biotechnol 2008; 26: 317–325. DOI: 10.1038/nbt1385</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Adam B., Afzali B., Dominy K.M., Chapman E., Gill R., Hidalgo L.G. et al. Multiplexed color-coded probe-based gene expression assessment for clinical molecular diagnostics in formalin-fixed paraffin-embedded human renal allograft tissue. Clin Transplant 2016; 30: 295–305. DOI: 10.1111/ctr.12689</mixed-citation><mixed-citation xml:lang="en">Adam B., Afzali B., Dominy K.M., Chapman E., Gill R., Hidalgo L.G. et al. Multiplexed  color-coded probe-based gene expression assessment for clinical molecular  diagnostics in formalin-fixed paraffin-embedded human  renal allograft tissue. Clin Transplant 2016; 30: 295–305. DOI: 10.1111/ctr.12689</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Reis P.P., Waldron L., Goswami R.S., Xu W., Xuan Y., Perez-Ordonez B. et al. mRNA transcript quantification in archival samples using multiplexed, color-coded probes. BMC biotechnology 2011; 11: 46. DOI: 10.1186/1472-6750-11-46</mixed-citation><mixed-citation xml:lang="en">Reis P.P., Waldron L., Goswami R.S.,  Xu W., Xuan Y., Perez-Ordonez B. et al. mRNA transcript  quantification  in archival samples  using multiplexed,  color-coded probes.  BMC  biotechnology 2011; 11: 46. DOI: 10.1186/1472-6750-11-46</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Sánchez-Navarro I., Gámez-Pozo A., González-Barón M., Pin-to-Marín A., Hardisson D., López R. et al. Comparison of gene expression profiling by reverse transcription quantitative PCR between fresh frozen and formalin-fixed, paraffin-embedded breast cancer tissues. Biotechniques 2010; 48(5): 389–397. DOI: 10.2144/000113388</mixed-citation><mixed-citation xml:lang="en">Sánchez-Navarro I., Gámez-Pozo A., González-Barón M., Pin-to-Marín A., Hardisson D., López R. et al. Comparison  of gene expression profiling by reverse transcription quantitative PCR between fresh frozen and formalin-fixed, paraffin-embedded breast  cancer  tissues. Biotechniques  2010; 48(5):  389–397. DOI: 10.2144/000113388</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Pascoe C.D., Obeidat M., Arsenault B.A., Nie Y., Warner S., Stefanowicz D. et al. Gene expression analysis in asthma using a targeted multiplex array. BMC Pulmonary Medicine 2017; 17: 189. DOI: 10.1186/s12890-017-0545-9</mixed-citation><mixed-citation xml:lang="en">Pascoe C.D., Obeidat M.,  Arsenault B.A., Nie Y., Warner S., Stefanowicz D. et al. Gene expression analysis in asthma using a targeted multiplex array. BMC Pulmonary  Medicine  2017; 17: 189. DOI: 10.1186/s12890-017-0545-9</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Terakado M., Gon Y., Sekiyama A., Takeshita I., Kozu Y., Matsumoto K. et al. The Rac1/JNK pathway is critical for EGFR-dependent barrier formation in human airway epithelial cells. Am J Physiol Lung Cell Mol Physiol 2011; 300: 56–63. DOI: 10.1152/ajplung.00159.2010</mixed-citation><mixed-citation xml:lang="en">Terakado M., Gon Y., Sekiyama A., Takeshita I., Kozu Y., Matsumoto K. et al. The Rac1/JNK pathway is critical for EGFR-dependent  barrier formation  in human airway epithelial cells. Am J Physiol Lung Cell Mol Physiol 2011; 300: 56–63. DOI: 10.1152/ajplung.00159.2010</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Ong C.-T., Corces V.G. CTCF: an architectural protein bridging genome topology and function. Nat Rev Genet 2014; 15: 234–246. DOI: 10.1038/nrg3663</mixed-citation><mixed-citation xml:lang="en">Ong C.-T., Corces V.G. CTCF:  an architectural  protein bridging genome topology and function.  Nat Rev Genet  2014; 15: 234–246. DOI: 10.1038/nrg3663</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Youssef D.M., Elbehidy R.M., Abdelhalim H.S., Amr G.E. Soluble Interleukine-2 Receptor and MDR1 Gene Expression Levels as Inflammatory Biomarkers for Prediction of Steroid Response in Children With Nephrotic Syndrome. Iran J Kidney Dis 2011; 5(3): 154–161.</mixed-citation><mixed-citation xml:lang="en">Youssef  D.M.,  Elbehidy  R.M.,   Abdelhalim  H.S.,   Amr  G.E. Soluble Interleukine-2 Receptor  and  MDR1  Gene  Expression   Levels  as  Inflammatory   Biomarkers   for  Prediction of Steroid Response in Children  With Nephrotic Syndrome. Iran J Kidney Dis 2011; 5(3): 154–161.</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Хундерякова Н.В., Захарченко М.В., Ячкула Т.В., Плясунова С.В., Сухоруков В.С., Баранич Т.И. и др. Неповреждающие высокочувствительные цито²биохимические показатели состояния митохондрий у человека для клинических исследований. В книге: Теоретическая и экспериментальная биофизика. Материалы конференции, посвященной 65-летию ИТЭБ РАН. М., 2017; 43.</mixed-citation><mixed-citation xml:lang="en">Hunderyakova N.V., Zakharchenko M.V., Yachkula T.V., Plyasunova S.V., Sukhorukov V.S., Baranich T.I. et al. Non-damaging, highly sensitive cyto-biochemical indicators  of the state of mitochondria in  humans  for clinical  studies.  In:  Theoretical and Experimental  Biophysics. Proc. of the conference dedicated  to  the  65th  anniversary  of ITEB  RAS. Moscow, 2017; 43. (in Russ)</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
